I definitely have some "God issues" that I need to work on. I've read a few threads recently and found that I still have a lot of anger towards God, the Catholic Church and even with some of the messages that are posted in this forum.
I do want a relationship with God, but I'm still really pissed off! Maybe this is the first step?
In many ways I'm in the same boat as you, except I don't feel angry at God, just disconnected. But I decided I just have to face this one like I have faced all the others. It really is the only way, I think.
You're doing the right thing. Considering everything else that God handles, I kinda figure he can handle you being pissed off at him. At least you're being honest.